Never used the DV codec in M100 before. Could someone enlighten me with the following Bitvice settings (from Media 100 PAL DV codec): Field order, Studio RGB, DV Luma & colour correction. Sorry for having to ask these basic questions, but I have no time to encode loads of alternatives for a test...
G5 dual 2.7, OS10.5.1, 4G RAM
Media100 HD V12 & Producer, AE 7
5.6 terra RAID
PAL DV is Lower Field first, StudioRGB off, the others set to their default. Make sure that your files are completely in PAL DV, since if you e.g. had your render settings set to something else you may experience Luma or Field order jumps.