I am editing a large project of video footage collected for multiple Canon DSLR cameras. I've noticed one of the cameras has a consistently glitch that appears for an average of 6-12 frames at least once per video file. To the best of my knowledge the glitch is not the result of the memory cards or camera (SanDisk Extreme Pro SD on a 6D), but I suspect it may have to do with disrupted offloading or an improperly ejected hard drive that was reported by our DIT.
More about the glitch: It appears as either pixelated segments or repeated frames that seem to occur with rolling shutter discontinuity that is common with panning or general camera motion. I've uploaded a short clip with the glitch here (occurs at 2 second mark): https://vimeo.com/96575338
Has any one else experienced this glitch on Canon DSLRs or with interrupted video offloads? Is there fix or program I can apply to the source file? Could anyone respond with general info about the glitch -- a more specific name or the root cause to prevent it from happening again?