Thanks. I can see the workflow you're trying to work with.
http://pro.jvc.com/prof/attributes/specs.jsp?model_id=MDL101893&feature_id=...
It's not entirely clear from the above how the H.264/AVC is handled.
AVCHD cameras would have an H.264 Transport Stream. I see on page 35 of the manual
AVCHD, MPEG2 TS, PS, MOV SD mode from JVC HM series.
They're clear as mud about AVCHD since they're assuming it's coming straight from a camera. You might have to look at a file from an AVCHD camera in MediaInfo (I haven't tried this) or something else that'll give you the details. Then you can try to match the specifics to do an H.264 Transport Stream.
Here's another shot since it says MOV from JVC HM in SD mode (that's HDV compatible rather than XDCAM EX compatible) you might try something like exporting from FCP timeline in HDV .MOV (which is actually MPEG2, not AVCHD). JVC HM files were designed to drop right in to FCP so this might be an easy route even though not ideal.
While I can't guarantee either H.264 TS or HDV MOV it's an educated guess. BTW this is why presenting the full workflow can help me/us target possible solutions. Thanks for adding those key details.