You need three layers.
One at the back would be your Template Layer or a group.
After this layer you need to position your rendered movie that you want to break. (to break it you need to use Shatter filter from Boris FX, this in my opinion is the best Shutter filter for Motion or you can use fxtiles from http://www.boinx.com/fxtiles/overview/).
Then you need to animate your third object (Logo) to come from behind the camera. Open the position of the object and animate Z position of your logog. When you reach your desired position of the logo then animate the shutter of your rendered video. So that it looks like it crashes into video and breaks it apart.