Over the weekend, I captured the footage first try on one of the Flames. I think the Smoke might be wired incorrectly like was mentioned. There are 2 cables hooked up to the A and B inputs on the breakout box, but looking at the AJA ControlPanel app something is wrong.
I changed the Video Input Source to Dual Link, restarted Smoke, no change in capture. I then also changed SDI from YUV to RGB-Full, restarted Smoke, still greenish capture.
The 'No Video' next to the SDI In 2 Arrow looks suspect to me. I am going to check the wiring to the VTR.
Thanks for all of the replies! Please let me know what your AJA ControlPanels look like compared to mine.