[susana sanz] "Clips were captured from a MacBook Pro, with the Matrox MXO2, using
the codec Apple Pro Res 422HQ, 10 bits, 4:2:2 full raster. "
That setup is not certified for a ProResHQ capture on a laptop.
That may or may not be part of the issue, dropped frames should not have been an issue on a desktop CPU capture
.
[susana sanz] "he format we have shot on is HDCAM, which is a 8 bits, 3:1:1
format, and as we have captured the footage in 10 bits, 4:2:2, could
it be the reason why we are having these problems?? "
No.
that is correct for what you are doing the HDSDI signal out of the deck would be 4:2:2 and the color space conforms to the SMPTE spec.for baseband video.
gary adcock
Studio37
HD & Film Consultation
Post and Production Workflows
Inside look at the IoHD
http://library.creativecow.net/articles/adcock_gary/AJAIOHD.php