[Jurjen Versteeg] "Ah! That's it. I already thought it could be the problem, but couldn't find any duplicates, until I just found out I renamed the duplicated pre-comp. Thanks!"
You're welcome.
It might be a bit confusing in the main comp, but you could snap the precomp back to matching at the first frame, then enable time remapping for that layer only to offset it in time. That will keep your CTI consistent as you move back and forth between comps.
Walter Soyka
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